1. CLONEID – a framework that integrates measurements obtained from different technologies, or from multi-spatial or longitudinal biopsies, into approximations of the identities of coexisting tumor clones. A main goal is to engineer an interface between experimental, computational and mathematical oncology. 

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2. LIAYSON – method for detecting co-existing clones in a tumor sample from single-cell RNA-Seq: released as open-source R-package on GitHub and CRAN.